![]() Downloading and preparing files for analysisĦ. To view documentation for the version of this package installedģ. If (!require("BiocManager", quietly = TRUE))įor older versions of R, please refer to the appropriate To install this package, start R (version Maintainer: Tiago Chedraoui Silva, Antonio Colaprico Pagnotta, Isabella Castiglioni, Michele Ceccarelli, Gianluca Bontempi, Houtan Noushmehr ![]() ![]() In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.Īuthor: Antonio Colaprico, Tiago Chedraoui Silva, Catharina Olsen, Luciano Garofano, Davide Garolini, Claudia Cava, Thais Sabedot, Tathiane Malta, Stefano M. The aim of TCGAbiolinks is : i) facilitate the GDC open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) to easily reproduce earlier research results. DOI: 10.18129/B9.bioc.TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data ![]()
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